From patchwork Thu Sep 15 11:38:02 2016 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Roel Janssen X-Patchwork-Id: 15655 Received: (qmail 94903 invoked by uid 89); 15 Sep 2016 11:38:31 -0000 Authentication-Results: sourceware.org; auth=none X-Virus-Checked: by ClamAV 0.99.2 on sourceware.org X-Virus-Found: No X-Spam-SWARE-Status: No, score=-4.0 required=5.0 tests=AWL, BAYES_00, RP_MATCHES_RCVD, SPF_PASS autolearn=ham version=3.3.2 spammy=comprehensive, 3.4, Boost X-Spam-Status: No, score=-4.0 required=5.0 tests=AWL, BAYES_00, RP_MATCHES_RCVD, SPF_PASS autolearn=ham version=3.3.2 X-Spam-Checker-Version: SpamAssassin 3.3.2 (2011-06-06) on sourceware.org X-Spam-Level: X-HELO: lists.gnu.org Received: from lists.gnu.org (HELO lists.gnu.org) (208.118.235.17) by sourceware.org (qpsmtpd/0.93/v0.84-503-g423c35a) with ESMTP; Thu, 15 Sep 2016 11:38:21 +0000 Received: from localhost ([::1]:33694 helo=lists.gnu.org) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1bkUzj-0002Pd-K1 for patchwork@sourceware.org; Thu, 15 Sep 2016 07:38:19 -0400 Received: from eggs.gnu.org ([2001:4830:134:3::10]:33782) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1bkUyc-0001Z3-69 for guix-devel@gnu.org; Thu, 15 Sep 2016 07:37:11 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1bkUyZ-0004Qu-U2 for guix-devel@gnu.org; Thu, 15 Sep 2016 07:37:09 -0400 Received: from fencepost.gnu.org ([2001:4830:134:3::e]:34665) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1bkUyZ-0004QC-Px for guix-devel@gnu.org; Thu, 15 Sep 2016 07:37:07 -0400 Received: from ip-80-113-14-101.ip.prioritytelecom.net ([80.113.14.101]:24708 helo=roel-tp) by fencepost.gnu.org with esmtpsa (TLS1.2:RSA_AES_256_CBC_SHA1:256) (Exim 4.82) (envelope-from ) id 1bkUyY-0005pm-4g for guix-devel@gnu.org; Thu, 15 Sep 2016 07:37:06 -0400 User-agent: mu4e 0.9.17; emacs 25.1.1 From: Roel Janssen To: guix-devel@gnu.org Subject: [PATCH 2/7] gnu: Add r-rbgl. Date: Thu, 15 Sep 2016 13:38:02 +0200 Message-ID: <87k2eds89x.fsf@gnu.org> MIME-Version: 1.0 X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x [generic] X-Received-From: 2001:4830:134:3::e X-BeenThere: guix-devel@gnu.org X-Mailman-Version: 2.1.21 Precedence: list List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+patchwork=sourceware.org@gnu.org Sender: "Guix-devel" * gnu/packages/bioinformatics.scm (r-rbgl): New variable. --- gnu/packages/bioinformatics.scm | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index ffb9692..3d607cc 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -5309,6 +5309,30 @@ packages.") CRAN, and (some) github packages.") (license license:artistic2.0))) +(define-public r-rbgl + (package + (name "r-rbgl") + (version "1.49.3") + (source (origin + (method url-fetch) + (uri (string-append + "https://bioconductor.org/packages/3.4/bioc/src/contrib/" + "RBGL_" version ".tar.gz")) + (sha256 + (base32 + "0rpiqpalbxk82jkwv3l0fimq9y2hrdi0f7ca4v21318541vfsncs")))) + (properties + `((upstream-name . "RBGL"))) + (build-system r-build-system) + (propagated-inputs + `(("r-graph" ,r-graph))) + (home-page "http://bioconductor.org/packages/RBGL") + (synopsis "Interface to the graph algorithms from Boost") + (description + "This package provides a fairly extensive and comprehensive interface to +the graph algorithms contained in the Boost library.") + (license license:artistic2.0))) + (define-public r-dnacopy (package (name "r-dnacopy")