From patchwork Tue Jun 28 14:50:42 2016 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Ricardo Wurmus X-Patchwork-Id: 13422 Received: (qmail 6918 invoked by uid 89); 28 Jun 2016 14:51:27 -0000 Authentication-Results: sourceware.org; auth=none X-Virus-Checked: by ClamAV 0.99.1 on sourceware.org X-Virus-Found: No X-Spam-SWARE-Status: No, score=-2.8 required=5.0 tests=AWL, BAYES_00, KAM_INFOUSMEBIZ, RP_MATCHES_RCVD, SPF_PASS autolearn=ham version=3.3.2 spammy=chip, intends, Hx-languages-length:1574, strverscmp X-Spam-Status: No, score=-2.8 required=5.0 tests=AWL, BAYES_00, KAM_INFOUSMEBIZ, RP_MATCHES_RCVD, SPF_PASS autolearn=ham version=3.3.2 X-Spam-Checker-Version: SpamAssassin 3.3.2 (2011-06-06) on sourceware.org X-Spam-Level: X-HELO: lists.gnu.org Received: from lists.gnu.org (HELO lists.gnu.org) (208.118.235.17) by sourceware.org (qpsmtpd/0.93/v0.84-503-g423c35a) with (AES256-SHA encrypted) ESMTPS; Tue, 28 Jun 2016 14:51:16 +0000 Received: from localhost ([::1]:37313 helo=lists.gnu.org) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1bHuM6-0006ef-J3 for patchwork@sourceware.org; Tue, 28 Jun 2016 10:51:14 -0400 Received: from eggs.gnu.org ([2001:4830:134:3::10]:37843) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1bHuLw-0006aq-UF for guix-devel@gnu.org; Tue, 28 Jun 2016 10:51:06 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1bHuLs-0005cP-N4 for guix-devel@gnu.org; Tue, 28 Jun 2016 10:51:03 -0400 Received: from pegasus.bbbm.mdc-berlin.de ([141.80.25.20]:60307) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1bHuLs-0005bh-Cu for guix-devel@gnu.org; Tue, 28 Jun 2016 10:51:00 -0400 Received: from localhost (localhost [127.0.0.1]) by pegasus.bbbm.mdc-berlin.de (Postfix) with ESMTP id A3ECC3810F4 for ; Tue, 28 Jun 2016 16:50:56 +0200 (CEST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:mime-version:x-mailer:message-id:date :date:subject:subject:from:from:received:received:received; s= mdc; t=1467125445; x=1468939846; bh=euvF53SGnGO77GvDPwhPq/BMMPRT kJTOVLwBQ60Qf4s=; b=Y9wug9nTj5wex0lLCsdtQBdSknaohtKVV+/Cnx1TU3d4 EAUZ2WCUWahQiqd8vIrfUVCBF2NM6c08Hwle4vJujej9ZrIhuBtre9n8x1uDaY85 HWkgVdLn1/i4g8GzCLh8KfHA7Z2d/kJo3rmSQfEoWZcFYIRXi+6d2rLlQf8NBdM= X-Virus-Scanned: amavisd-new at mdc-berlin.de Received: from pegasus.bbbm.mdc-berlin.de ([127.0.0.1]) by localhost (pegasus.bbbm.mdc-berlin.de [127.0.0.1]) (amavisd-new, port 10024) with ESMTP id tTj7rRWUgYTH for ; Tue, 28 Jun 2016 16:50:45 +0200 (CEST) Received: from HTCATWO.mdc-berlin.net (puck.citx.mdc-berlin.de [141.80.36.101]) (using TLSv1 with cipher ECDHE-RSA-AES256-SHA (256/256 bits)) (No client certificate requested) by pegasus.bbbm.mdc-berlin.de (Postfix) with ESMTPS for ; Tue, 28 Jun 2016 16:50:44 +0200 (CEST) Received: from localhost (141.80.180.135) by HTCATWO.mdc-berlin.net (141.80.180.125) with Microsoft SMTP Server (TLS) id 14.3.294.0; Tue, 28 Jun 2016 16:50:43 +0200 From: Ricardo Wurmus To: Subject: [PATCH] gnu: Add multiqc. Date: Tue, 28 Jun 2016 16:50:42 +0200 Message-ID: <20160628145042.25341-1-ricardo.wurmus@mdc-berlin.de> X-Mailer: git-send-email 2.8.4 MIME-Version: 1.0 X-Originating-IP: [141.80.180.135] X-TM-AS-Product-Ver: SMEX-11.0.0.4255-8.000.1202-22418.007 X-TM-AS-Result: No--1.634600-0.000000-31 X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-detected-operating-system: by eggs.gnu.org: GNU/Linux 3.x X-Received-From: 141.80.25.20 X-BeenThere: guix-devel@gnu.org X-Mailman-Version: 2.1.21 Precedence: list List-Id: "Development of GNU Guix and the GNU System distribution." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-devel-bounces+patchwork=sourceware.org@gnu.org Sender: "Guix-devel" * gnu/packages/bioinformatics.scm (multiqc): New variable. --- gnu/packages/bioinformatics.scm | 30 ++++++++++++++++++++++++++++++ 1 file changed, 30 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 04ed769..45595d0 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -5321,3 +5321,33 @@ group or two ChIP groups run under different conditions.") (description "This program compares version strings. It intends to be a replacement for strverscmp.") (license license:gpl3+)))) + +(define-public multiqc + (package + (name "multiqc") + (version "0.6") + (source + (origin + (method url-fetch) + (uri (string-append + "https://pypi.python.org/packages/23/d9/95a5e62eea95f220007d7a6683d0da1ee1d9f99e6932bcff793b6601ef15/multiqc-" + version ".tar.gz")) + (sha256 + (base32 + "0avw11h63ldpxy5pizc3wl1wa01ha7q10wb240nggsjz3jaqvyiy")))) + (build-system python-build-system) + (propagated-inputs + `(("python-jinja2" ,python-jinja2) + ("python-simplejson" ,python-simplejson) + ("python-pyyaml" ,python-pyyaml) + ("python-click" ,python-click) + ("python-matplotlib" ,python-matplotlib))) + (native-inputs + `(("python-setuptools" ,python-setuptools))) + (home-page "http://multiqc.info") + (synopsis "Aggregate bioinformatics analysis reports") + (description + "MultiQC is a tool to aggregate bioinformatics results across many +samples into a single report. It contains modules for a large number of +common bioinformatics tools.") + (license license:gpl3)))