| Message ID | 87mvo761cn.fsf@gnu.org |
|---|---|
| State | Dropped |
| Headers | show |
Roel Janssen <roel@gnu.org> writes: > Dear Guix, > > I have two R packages I would like to add. The other package 'r-edger' > depends on this one. This is the first time I'm attempting an inline > patch, so I hope this works out well. Thanks for the patch. It worked! >>From 565fa10f9896e1143419b2a2c6496b91a135a930 Mon Sep 17 00:00:00 2001 > From: Roel Janssen <roel@gnu.org> > Date: Tue, 3 May 2016 09:30:14 +0200 > Subject: [PATCH] gnu: Add r-limma. > > * gnu/packages/bioinformatics.scm (r-limma): New variable. > --- > gnu/packages/bioinformatics.scm | 18 ++++++++++++++++++ > 1 file changed, 18 insertions(+) > > diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm > index 079fd46..3dfb55e 100644 > --- a/gnu/packages/bioinformatics.scm > +++ b/gnu/packages/bioinformatics.scm > @@ -4171,6 +4171,24 @@ names in their natural, rather than lexicographic, order.") > coding changes and predict coding outcomes.") > (license license:artistic2.0))) > > +(define-public r-limma > + (package > + (name "r-limma") > + (version "3.26.9") > + (source (origin > + (method url-fetch) > + (uri (bioconductor-uri "limma" version)) > + (sha256 > + (base32 > + "0mj72zsj1awjf3i2y9x8m7ih4sx9qrs1rlrck9l7mn5afxqsfrsm")))) > + (properties `((upstream-name . "limma"))) I don’t think we need this as the name is all lowercase, as expected. We only set the “upstream-name” property when the name contains special characters or uppercase letters. > + (build-system r-build-system) > + (home-page "http://bioinf.wehi.edu.au/limma") > + (synopsis "This package provides linear models for microarray data") > + (description "This package provides linear models and differential > +expression for microarray data analysis.") The description could be improved. There’s a better description on the home page. You might be able to adapt it. > + (license license:gpl2+))) > + > (define-public r-xvector > (package > (name "r-xvector") ~~ Ricardo
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 079fd46..3dfb55e 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -4171,6 +4171,24 @@ names in their natural, rather than lexicographic, order.") coding changes and predict coding outcomes.") (license license:artistic2.0))) +(define-public r-limma + (package + (name "r-limma") + (version "3.26.9") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "limma" version)) + (sha256 + (base32 + "0mj72zsj1awjf3i2y9x8m7ih4sx9qrs1rlrck9l7mn5afxqsfrsm")))) + (properties `((upstream-name . "limma"))) + (build-system r-build-system) + (home-page "http://bioinf.wehi.edu.au/limma") + (synopsis "This package provides linear models for microarray data") + (description "This package provides linear models and differential +expression for microarray data analysis.") + (license license:gpl2+))) + (define-public r-xvector (package (name "r-xvector")