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[7/7] gnu: Add r-bioccheck.

Message ID 87bmzps87x.fsf@gnu.org
State New
Headers show

Commit Message

Roel Janssen Sept. 15, 2016, 11:39 a.m. UTC
* gnu/packages/bioinformatics.scm (r-bioccheck): New variable.
---
 gnu/packages/bioinformatics.scm | 29 +++++++++++++++++++++++++++++
 1 file changed, 29 insertions(+)

Comments

Ricardo Wurmus Sept. 19, 2016, 12:37 p.m. UTC | #1
Roel Janssen <roel@gnu.org> writes:

> * gnu/packages/bioinformatics.scm (r-bioccheck): New variable.
> ---
>  gnu/packages/bioinformatics.scm | 29 +++++++++++++++++++++++++++++
>  1 file changed, 29 insertions(+)
>
> diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
> index 902d1d2..00a4161 100644
> --- a/gnu/packages/bioinformatics.scm
> +++ b/gnu/packages/bioinformatics.scm
> @@ -5426,6 +5426,35 @@ like automatically generated help option and usage, support for default
>  values, positional argument support, etc.")                                                                     
>      (license license:gpl2+)))
>  
> +(define-public r-bioccheck
> +  (package
> +    (name "r-bioccheck")
> +    (version "1.8.2")
> +    (source (origin
> +              (method url-fetch)
> +              (uri (bioconductor-uri "BiocCheck" version))
> +              (sha256
> +               (base32
> +                "0bvkhxmr25nb0gkncifbc3x48i5zgls3737g3xais6jx16wd4q35"))))
> +    (properties
> +     `((upstream-name . "BiocCheck")))
> +    (build-system r-build-system)
> +    (inputs
> +     `(("which" ,which)))

Is this a native input?

> +    (propagated-inputs
> +     `(("r-graph" ,r-graph)
> +       ("r-knitr" ,r-knitr)
> +       ("r-httr" ,r-httr)
> +       ("r-optparse" ,r-optparse)
> +       ("r-devtools" ,r-devtools)
> +       ("r-biocinstaller" ,r-biocinstaller)
> +       ("r-biocviews" ,r-biocviews)))
> +    (home-page "http://bioconductor.org/packages/BiocCheck")
> +    (synopsis "Executes Bioconductor-specific package checks")
> +    (description "This package executes Bioconductor-specific
> +package checks.")

Well… okay. :)  It would be nice if it was a little more specific.

Maybe:

   This package contains tools to perform quality checks on R packages
   that are to be submitted to the Bioconductor repository.

WDYT?

~~ Ricardo
diff mbox

Patch

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 902d1d2..00a4161 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5426,6 +5426,35 @@  like automatically generated help option and usage, support for default
 values, positional argument support, etc.")                                                                     
     (license license:gpl2+)))
 
+(define-public r-bioccheck
+  (package
+    (name "r-bioccheck")
+    (version "1.8.2")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "BiocCheck" version))
+              (sha256
+               (base32
+                "0bvkhxmr25nb0gkncifbc3x48i5zgls3737g3xais6jx16wd4q35"))))
+    (properties
+     `((upstream-name . "BiocCheck")))
+    (build-system r-build-system)
+    (inputs
+     `(("which" ,which)))
+    (propagated-inputs
+     `(("r-graph" ,r-graph)
+       ("r-knitr" ,r-knitr)
+       ("r-httr" ,r-httr)
+       ("r-optparse" ,r-optparse)
+       ("r-devtools" ,r-devtools)
+       ("r-biocinstaller" ,r-biocinstaller)
+       ("r-biocviews" ,r-biocviews)))
+    (home-page "http://bioconductor.org/packages/BiocCheck")
+    (synopsis "Executes Bioconductor-specific package checks")
+    (description "This package executes Bioconductor-specific
+package checks.")
+    (license license:artistic2.0)))
+
 (define-public r-dnacopy
   (package
     (name "r-dnacopy")