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[07/25] gnu: Add r-genefilter.

Message ID 20160921204541.3981-7-ricardo.wurmus@mdc-berlin.de
State New
Headers show

Commit Message

Ricardo Wurmus Sept. 21, 2016, 8:45 p.m. UTC
* gnu/packages/bioinformatics.scm (r-genefilter): New variable.
---
 gnu/packages/bioinformatics.scm | 26 ++++++++++++++++++++++++++
 1 file changed, 26 insertions(+)
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Patch

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 30f1f6a..18e688f 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5092,6 +5092,32 @@  microarrays.")
      "This package provides functions for plotting genomic data.")
     (license license:artistic2.0)))
 
+(define-public r-genefilter
+  (package
+    (name "r-genefilter")
+    (version "1.54.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "genefilter" version))
+       (sha256
+        (base32
+         "1hmz6as0njvrsrdbgmk72jyclnnqvfdvp6kqv456h43ldq2ajfv5"))))
+    (build-system r-build-system)
+    (native-inputs
+     `(("gfortran" ,gfortran)))
+    (propagated-inputs
+     `(("r-annotate" ,r-annotate)
+       ("r-annotationdbi" ,r-annotationdbi)
+       ("r-biobase" ,r-biobase)
+       ("r-s4vectors" ,r-s4vectors)))
+    (home-page "http://bioconductor.org/packages/genefilter")
+    (synopsis "Filter genes from high-throughput experiments")
+    (description
+     "This package provides basic functions for filtering genes from
+high-throughput sequencing experiments.")
+    (license license:artistic2.0)))
+
 (define-public vsearch
   (package
     (name "vsearch")