Patchwork [19/25] gnu: Add r-gseabase.

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Submitter Ricardo Wurmus
Date Sept. 21, 2016, 8:45 p.m.
Message ID <20160921204541.3981-19-ricardo.wurmus@mdc-berlin.de>
Download mbox | patch
Permalink /patch/15878/
State New
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Ricardo Wurmus - Sept. 21, 2016, 8:45 p.m.
* gnu/packages/bioinformatics.scm (r-gseabase): New variable.
---
 gnu/packages/bioinformatics.scm | 27 +++++++++++++++++++++++++++
 1 file changed, 27 insertions(+)

Patch

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index d9acb00..52fa17c 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5213,6 +5213,33 @@  databases.  Packages produced are intended to be used with AnnotationDbi.")
 the graph algorithms contained in the Boost library.")
     (license license:artistic2.0)))
 
+(define-public r-gseabase
+  (package
+    (name "r-gseabase")
+    (version "1.34.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "GSEABase" version))
+       (sha256
+        (base32
+         "0l3y7hq3vabildr6djsn50x0kfgihpbqxwvh7rw6k18pv5k4j72c"))))
+    (properties `((upstream-name . "GSEABase")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-annotate" ,r-annotate)
+       ("r-annotationdbi" ,r-annotationdbi)
+       ("r-biobase" ,r-biobase)
+       ("r-biocgenerics" ,r-biocgenerics)
+       ("r-graph" ,r-graph)
+       ("r-xml" ,r-xml)))
+    (home-page "http://bioconductor.org/packages/GSEABase")
+    (synopsis "Gene set enrichment data structures and methods")
+    (description
+     "This package provides classes and methods to support @dfn{Gene Set
+Enrichment Analysis} (GSEA).")
+    (license license:artistic2.0)))
+
 (define-public vsearch
   (package
     (name "vsearch")