Patchwork [1/2] gnu: Add r-rhtslib.

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Submitter Ricardo Wurmus
Date Aug. 18, 2016, 11:09 a.m.
Message ID <20160818110942.28804-1-ricardo.wurmus@mdc-berlin.de>
Download mbox | patch
Permalink /patch/14745/
State New
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Comments

Ricardo Wurmus - Aug. 18, 2016, 11:09 a.m.
* gnu/packages/bioinformatics.scm (r-rhtslib): New variable.
---
 gnu/packages/bioinformatics.scm | 25 +++++++++++++++++++++++++
 1 file changed, 25 insertions(+)
Leo Famulari - Aug. 21, 2016, 8:26 p.m.
On Thu, Aug 18, 2016 at 01:09:41PM +0200, Ricardo Wurmus wrote:
> * gnu/packages/bioinformatics.scm (r-rhtslib): New variable.

LGTM
Ricardo Wurmus - Aug. 22, 2016, 2:53 p.m.
Leo Famulari <leo@famulari.name> writes:

> On Thu, Aug 18, 2016 at 01:09:41PM +0200, Ricardo Wurmus wrote:
>> * gnu/packages/bioinformatics.scm (r-rhtslib): New variable.
>
> LGTM

Thanks.  Pushed as 52765a63ca43a66137272e9826553c072c1ef769.

~~ Ricardo

Patch

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 233b7a8..ade6e37 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -6325,6 +6325,31 @@  two-dimensional genome scans.")
 libraries for systems that do not have these available via other means.")
     (license license:artistic2.0)))
 
+(define-public r-rhtslib
+  (package
+    (name "r-rhtslib")
+    (version "1.4.3")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "Rhtslib" version))
+       (sha256
+        (base32
+         "1wgpn9x8abjj7fc087pdavqc3fz0pl5xdh231mgjila18irwlhb3"))))
+    (properties `((upstream-name . "Rhtslib")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-zlibbioc" ,r-zlibbioc)))
+    (inputs
+     `(("zlib" ,zlib)))
+    (home-page "https://github.com/nhayden/Rhtslib")
+    (synopsis "High-throughput sequencing library as an R package")
+    (description
+     "This package provides the HTSlib C library for high-throughput
+nucleotide sequence analysis.  The package is primarily useful to developers
+of other R packages who wish to make use of HTSlib.")
+    (license license:lgpl2.0+)))
+
 (define-public emboss
   (package
     (name "emboss")